Variant report

Variant	rs7936745
Chromosome Location	chr11:105361058-105361059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11226747	1.00[ASN][1000 genomes]
rs1124519	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12271813	1.00[ASN][1000 genomes]
rs12273491	1.00[ASN][1000 genomes]
rs12276410	1.00[ASN][1000 genomes]
rs12277176	1.00[ASN][1000 genomes]
rs12277602	1.00[ASN][1000 genomes]
rs12279551	1.00[ASN][1000 genomes]
rs12292447	1.00[ASN][1000 genomes]
rs12294105	1.00[ASN][1000 genomes]
rs12294519	1.00[ASN][1000 genomes]
rs1945982	1.00[ASN][1000 genomes]
rs59105307	1.00[ASN][1000 genomes]
rs61168136	1.00[ASN][1000 genomes]
rs7125192	1.00[ASN][1000 genomes]
rs7129250	1.00[ASN][1000 genomes]
rs73633675	1.00[ASN][1000 genomes]
rs73633677	1.00[ASN][1000 genomes]
rs73633691	1.00[ASN][1000 genomes]
rs73633692	1.00[ASN][1000 genomes]
rs73634420	1.00[ASN][1000 genomes]
rs9988915	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105345800-105370000	Weak transcription	K562	blood
2	chr11:105359000-105361200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:105359200-105361200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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