Variant report

Variant	rs12281160
Chromosome Location	chr11:107683596-107683597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10400244	1.00[CEU][hapmap]
rs10890764	1.00[EUR][1000 genomes]
rs11212379	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11212383	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11212389	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11212390	1.00[EUR][1000 genomes]
rs11212391	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212392	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212393	1.00[EUR][1000 genomes]
rs11212394	1.00[EUR][1000 genomes]
rs11212395	1.00[EUR][1000 genomes]
rs11212396	1.00[EUR][1000 genomes]
rs11212397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212398	1.00[EUR][1000 genomes]
rs11212400	1.00[EUR][1000 genomes]
rs12098896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099368	1.00[EUR][1000 genomes]
rs12099420	0.82[EUR][1000 genomes]
rs12146456	1.00[EUR][1000 genomes]
rs12146459	1.00[EUR][1000 genomes]
rs12270982	0.91[EUR][1000 genomes]
rs12271120	1.00[EUR][1000 genomes]
rs12278904	1.00[EUR][1000 genomes]
rs12279264	0.95[EUR][1000 genomes]
rs12288093	1.00[EUR][1000 genomes]
rs12291200	1.00[EUR][1000 genomes]
rs12292050	1.00[EUR][1000 genomes]
rs12292254	1.00[EUR][1000 genomes]
rs12293650	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57429831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58124926	0.95[EUR][1000 genomes]
rs59036211	1.00[EUR][1000 genomes]
rs60539601	0.95[EUR][1000 genomes]
rs66625589	1.00[EUR][1000 genomes]
rs67596776	0.95[EUR][1000 genomes]
rs7118580	1.00[EUR][1000 genomes]
rs7120382	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72999546	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73001540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001542	0.81[EUR][1000 genomes]
rs73001547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001550	1.00[EUR][1000 genomes]
rs73001554	1.00[EUR][1000 genomes]
rs73001562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001563	1.00[EUR][1000 genomes]
rs73001566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73003327	1.00[EUR][1000 genomes]
rs73003344	1.00[EUR][1000 genomes]
rs73003346	1.00[EUR][1000 genomes]
rs73003355	1.00[EUR][1000 genomes]
rs73003360	1.00[EUR][1000 genomes]
rs73003382	1.00[EUR][1000 genomes]
rs73003384	1.00[EUR][1000 genomes]
rs73005370	0.95[EUR][1000 genomes]
rs747145	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1052198	chr11:107509918-107684371	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv556381	chr11:107644296-107684371	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv468867	chr11:107649026-107697633	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv556382	chr11:107649026-107697633	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv1035229	chr11:107653731-107717190	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107661000-107693200	Weak transcription	Spleen	Spleen
2	chr11:107661800-107685800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:107661800-107691800	Weak transcription	Esophagus	oesophagus
4	chr11:107662400-107686400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:107662800-107683800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:107663000-107683600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:107663200-107684200	Weak transcription	HepG2	liver
8	chr11:107663200-107690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:107664600-107683800	Weak transcription	Stomach Mucosa	stomach
10	chr11:107664600-107686000	Weak transcription	Gastric	stomach
11	chr11:107670800-107685000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:107671600-107685000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:107671600-107685800	Weak transcription	HSMM	muscle
14	chr11:107671600-107686200	Weak transcription	NHDF-Ad	bronchial
15	chr11:107672000-107697000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:107672800-107687800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:107673400-107727800	Weak transcription	Primary B cells from cord blood	blood
18	chr11:107673600-107689800	Weak transcription	HMEC	breast
19	chr11:107674400-107691800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:107676200-107684600	Strong transcription	GM12878-XiMat	blood
21	chr11:107676200-107684800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:107676400-107690000	Weak transcription	A549	lung
23	chr11:107676400-107694200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:107676800-107684000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:107677800-107683600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:107677800-107686200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:107677800-107689600	Weak transcription	NH-A	brain
28	chr11:107677800-107691800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:107678200-107684800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:107679000-107687600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:107679000-107691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:107679000-107696400	Weak transcription	Lung	lung
33	chr11:107679200-107685000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:107679600-107685800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:107679600-107691800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:107680000-107687400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr11:107681000-107683600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:107681000-107684200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:107681000-107684400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:107681000-107687200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:107681400-107685600	Weak transcription	Fetal Intestine Small	intestine
42	chr11:107681400-107686200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:107682200-107686000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:107682400-107684200	Weak transcription	K562	blood
45	chr11:107682400-107684800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:107682600-107684200	Weak transcription	NHEK	skin
47	chr11:107682600-107684400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:107682600-107685800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:107682600-107690000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:107682600-107695200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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