Variant report

Variant	rs73005370
Chromosome Location	chr11:107723999-107724000
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107719290..107725550-chr11:107725808..107730435,7	MCF-7	breast:
2	chr11:107722496..107727212-chr11:107727549..107730508,5	K562	blood:
3	chr11:107720451..107722516-chr11:107723737..107725547,2	K562	blood:
4	chr11:107723077..107725574-chr11:107732885..107735452,2	K562	blood:

Variant related genes	Relation type
ENSG00000110660	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10890764	0.95[EUR][1000 genomes]
rs11212379	0.82[EUR][1000 genomes]
rs11212383	0.87[EUR][1000 genomes]
rs11212389	0.95[EUR][1000 genomes]
rs11212390	0.95[EUR][1000 genomes]
rs11212391	0.95[EUR][1000 genomes]
rs11212392	0.95[EUR][1000 genomes]
rs11212393	0.95[EUR][1000 genomes]
rs11212394	0.95[EUR][1000 genomes]
rs11212395	0.95[EUR][1000 genomes]
rs11212396	0.95[EUR][1000 genomes]
rs11212397	0.95[EUR][1000 genomes]
rs11212398	0.95[EUR][1000 genomes]
rs11212400	0.95[EUR][1000 genomes]
rs12098896	0.95[EUR][1000 genomes]
rs12099368	0.95[EUR][1000 genomes]
rs12099420	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12146456	0.95[EUR][1000 genomes]
rs12146459	0.95[EUR][1000 genomes]
rs12270982	0.87[EUR][1000 genomes]
rs12271120	0.95[EUR][1000 genomes]
rs12278904	0.95[EUR][1000 genomes]
rs12279264	0.91[EUR][1000 genomes]
rs12281160	0.95[EUR][1000 genomes]
rs12288093	0.95[EUR][1000 genomes]
rs12291200	0.95[EUR][1000 genomes]
rs12292050	0.95[EUR][1000 genomes]
rs12292254	0.95[EUR][1000 genomes]
rs12293650	0.95[EUR][1000 genomes]
rs57429831	0.95[EUR][1000 genomes]
rs58124926	0.91[EUR][1000 genomes]
rs59036211	0.95[EUR][1000 genomes]
rs60539601	0.91[EUR][1000 genomes]
rs66535921	0.83[EUR][1000 genomes]
rs66625589	0.95[EUR][1000 genomes]
rs67596776	0.91[EUR][1000 genomes]
rs7118580	0.95[EUR][1000 genomes]
rs7120382	0.91[EUR][1000 genomes]
rs72999546	0.82[EUR][1000 genomes]
rs73001540	0.95[EUR][1000 genomes]
rs73001547	0.95[EUR][1000 genomes]
rs73001550	0.95[EUR][1000 genomes]
rs73001554	0.95[EUR][1000 genomes]
rs73001562	0.95[EUR][1000 genomes]
rs73001563	0.95[EUR][1000 genomes]
rs73001566	0.95[EUR][1000 genomes]
rs73003327	0.95[EUR][1000 genomes]
rs73003344	0.95[EUR][1000 genomes]
rs73003346	0.95[EUR][1000 genomes]
rs73003355	0.95[EUR][1000 genomes]
rs73003360	0.95[EUR][1000 genomes]
rs73003382	0.95[EUR][1000 genomes]
rs73003384	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1052829	chr11:107686808-107725297	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1045388	chr11:107686808-107733498	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv3417743	chr11:107699670-107725103	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107673400-107727800	Weak transcription	Primary B cells from cord blood	blood
2	chr11:107712200-107728400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:107712400-107727200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:107712400-107727800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:107712400-107728000	Weak transcription	NHDF-Ad	bronchial
6	chr11:107712600-107727000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:107712600-107727000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:107712600-107728200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:107712600-107728600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:107712800-107727000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:107713000-107728400	Weak transcription	Fetal Intestine Small	intestine
12	chr11:107713400-107727200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:107713600-107725000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:107715000-107725400	Weak transcription	HUVEC	blood vessel
15	chr11:107715000-107727800	Weak transcription	HMEC	breast
16	chr11:107716600-107727600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:107719600-107727000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:107719600-107727600	Weak transcription	A549	lung
19	chr11:107719600-107728800	Weak transcription	Small Intestine	intestine
20	chr11:107720000-107725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:107720000-107727600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:107720000-107727800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:107721000-107727200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:107721000-107727200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:107721000-107728200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:107721200-107725400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:107721200-107727200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:107721200-107727200	Weak transcription	Esophagus	oesophagus
29	chr11:107721200-107728400	Weak transcription	Gastric	stomach
30	chr11:107721600-107728400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:107721800-107727600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:107722400-107724200	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:107722600-107724200	Strong transcription	NHEK	skin
34	chr11:107723000-107727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:107723200-107727200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:107723400-107724000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr11:107723600-107724200	Enhancers	K562	blood
38	chr11:107723800-107724000	Enhancers	GM12878-XiMat	blood

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