Variant report

Variant	rs12282321
Chromosome Location	chr11:36584617-36584618
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11033738	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033739	1.00[AMR][1000 genomes]
rs11033791	1.00[AMR][1000 genomes]
rs12270782	1.00[AMR][1000 genomes]
rs12272250	1.00[AMR][1000 genomes]
rs12277409	1.00[AMR][1000 genomes]
rs12281063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294126	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36580400-36586000	Weak transcription	Liver	Liver
2	chr11:36581600-36586200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:36582000-36586000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:36582000-36587000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:36582400-36584800	Weak transcription	Fetal Thymus	thymus
6	chr11:36582400-36586200	Weak transcription	Aorta	Aorta
7	chr11:36583600-36585600	Weak transcription	Dnd41	blood
8	chr11:36584400-36586200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:36584600-36585200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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