Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11033704	0.91[YRI][hapmap]
rs11033705	0.91[YRI][hapmap]
rs11033726	1.00[YRI][hapmap]
rs11033738	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033739	1.00[AMR][1000 genomes]
rs11033791	1.00[AMR][1000 genomes]
rs11825620	0.91[YRI][hapmap]
rs12270782	1.00[AMR][1000 genomes]
rs12271279	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12271312	1.00[YRI][hapmap]
rs12272250	1.00[AMR][1000 genomes]
rs12273796	0.88[YRI][hapmap]
rs12276673	0.82[AFR][1000 genomes]
rs12277409	1.00[AMR][1000 genomes]
rs12277745	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs12279639	0.82[AFR][1000 genomes]
rs12281063	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283026	0.91[YRI][hapmap]
rs12294126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377317	1.00[YRI][hapmap]
rs4150999	0.89[YRI][hapmap]
rs4151030	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs4151047	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs7949264	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4151001	C11orf74	cis	multi-tissue	Pritchard
rs4151001	RAG1	cis	multi-tissue	Pritchard
rs4151001	LOC119710	cis	multi-tissue	Pritchard

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36586400-36595200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:36586600-36595000	Weak transcription	Left Ventricle	heart
3	chr11:36586600-36595200	Weak transcription	Right Ventricle	heart
4	chr11:36586800-36599400	Weak transcription	Liver	Liver
5	chr11:36586800-36600200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:36587000-36590800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:36587000-36595000	Weak transcription	Pancreas	Pancrea
8	chr11:36587200-36595000	Weak transcription	Spleen	Spleen
9	chr11:36587200-36595200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:36587400-36594800	Active TSS	Thymus	Thymus
11	chr11:36589400-36590200	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:36589600-36593200	Active TSS	Fetal Thymus	thymus
13	chr11:36589800-36595200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:36589800-36600800	Transcr. at gene 5' and 3'	Dnd41	blood

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