Variant report
| Variant | rs7949264 |
|---|---|
| Chromosome Location | chr11:36565075-36565076 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:36559925..36562026-chr11:36563187..36566000,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11033726 | 1.00[YRI][hapmap] |
| rs11033738 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11033739 | 1.00[AMR][1000 genomes] |
| rs12270782 | 1.00[AMR][1000 genomes] |
| rs12271279 | 1.00[YRI][hapmap] |
| rs12271312 | 1.00[YRI][hapmap] |
| rs12272250 | 1.00[AMR][1000 genomes] |
| rs12277409 | 1.00[AMR][1000 genomes] |
| rs12281063 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12282321 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12294126 | 1.00[AMR][1000 genomes] |
| rs13377317 | 1.00[YRI][hapmap] |
| rs4151001 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv467791 | chr11:36108497-36999385 | Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv554003 | chr11:36108497-36999385 | ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 3 | esv2760215 | chr11:36559278-36573022 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7949264 | C11orf74 | cis | multi-tissue | Pritchard |
Chromatin state (count:0 , 50 per page) page:
| No data |
