Variant report

Variant	rs12283006
Chromosome Location	chr11:102739920-102739921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11225421	1.00[YRI][hapmap]
rs11225423	1.00[YRI][hapmap]
rs12272274	1.00[YRI][hapmap]
rs12274582	1.00[YRI][hapmap]
rs12282811	1.00[YRI][hapmap]
rs12293223	1.00[YRI][hapmap]
rs470277	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102735800-102740000	Weak transcription	Stomach Mucosa	stomach
2	chr11:102738600-102740000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:102738600-102740200	Enhancers	NHLF	lung
4	chr11:102738600-102740400	Enhancers	NHDF-Ad	bronchial
5	chr11:102738600-102740800	Enhancers	Colon Smooth Muscle	Colon
6	chr11:102738800-102741600	Enhancers	Hela-S3	cervix
7	chr11:102739200-102740000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:102739600-102740000	Enhancers	HSMMtube	muscle
9	chr11:102739600-102741200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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