Variant report

Variant	rs12283331
Chromosome Location	chr11:36620092-36620093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10836583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1105593	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11827987	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12804142	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1498336	0.80[ASN][1000 genomes]
rs1498338	0.80[ASN][1000 genomes]
rs16926234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1818545	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7104753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113441	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942300	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36616600-36621800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36616600-36640400	Weak transcription	Esophagus	oesophagus
3	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
4	chr11:36616800-36621800	Active TSS	Fetal Thymus	thymus
5	chr11:36616800-36639600	Weak transcription	Aorta	Aorta
6	chr11:36617000-36622200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:36617200-36621800	Active TSS	Thymus	Thymus
8	chr11:36617200-36622000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:36617200-36626800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:36617200-36630000	Weak transcription	HSMMtube	muscle
11	chr11:36617200-36640000	Weak transcription	Fetal Stomach	stomach
12	chr11:36617400-36632400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:36617600-36622000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:36618000-36623400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:36618000-36640400	Weak transcription	Primary T cells from cord blood	blood
16	chr11:36618200-36620200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr11:36618400-36622000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:36620000-36621000	Flanking Active TSS	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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