Variant report

Variant	rs1498336
Chromosome Location	chr11:36639684-36639685
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10400354	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10734444	0.82[EUR][1000 genomes]
rs10836582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1105593	0.82[ASN][1000 genomes]
rs11827987	0.82[ASN][1000 genomes]
rs12272732	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12283331	0.80[ASN][1000 genomes]
rs12293560	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12418749	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12419177	0.86[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12794469	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12807113	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1498338	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2227973	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3740961	0.83[CEU][hapmap]
rs3758874	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4325287	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59563638	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66816307	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7104753	0.80[ASN][1000 genomes]
rs7113441	0.82[JPT][hapmap]
rs7119197	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7942300	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7948751	0.82[EUR][1000 genomes]
rs7949234	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36616600-36640400	Weak transcription	Esophagus	oesophagus
2	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
3	chr11:36617200-36640000	Weak transcription	Fetal Stomach	stomach
4	chr11:36618000-36640400	Weak transcription	Primary T cells from cord blood	blood
5	chr11:36626800-36641000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:36627400-36639800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:36628800-36640200	Weak transcription	Fetal Kidney	kidney
8	chr11:36630000-36678800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:36630400-36641000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:36630600-36640400	Weak transcription	Ovary	ovary
11	chr11:36630600-36649000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:36630600-36661000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:36630600-36682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:36631000-36640800	Weak transcription	HSMM	muscle
15	chr11:36632800-36639800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:36633000-36640000	Weak transcription	Psoas Muscle	Psoas
17	chr11:36633000-36640200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:36633000-36640800	Weak transcription	Adipose Nuclei	Adipose
19	chr11:36633600-36656000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:36637800-36639800	Weak transcription	Fetal Brain Female	brain
21	chr11:36637800-36640400	Weak transcription	Brain Anterior Caudate	brain
22	chr11:36639000-36640200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:36639000-36641000	Enhancers	Colon Smooth Muscle	Colon
24	chr11:36639200-36640200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:36639200-36641200	Enhancers	K562	blood
26	chr11:36639400-36640400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:36639600-36639800	Enhancers	Fetal Thymus	thymus
28	chr11:36639600-36639800	Enhancers	Thymus	Thymus
29	chr11:36639600-36640800	Enhancers	Aorta	Aorta
30	chr11:36639600-36641200	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:36639600-36642200	Flanking Active TSS	Dnd41	blood

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