Variant report

Variant	rs12283374
Chromosome Location	chr11:34018300-34018301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34016657..34020888-chr11:34127780..34130463,3	K562	blood:
2	chr11:34017204..34020055-chr11:34021200..34023906,3	K562	blood:
3	chr11:34017302..34020894-chr11:34072155..34075321,5	MCF-7	breast:
4	chr11:34017030..34019308-chr11:34075054..34077905,2	K562	blood:
5	chr11:34018236..34019254-chr11:34072775..34073515,3	MCF-7	breast:
6	chr11:34018085..34021579-chr11:34051099..34053696,3	K562	blood:
7	chr11:34018287..34020760-chr11:34051667..34053419,2	K562	blood:
8	chr11:34017694..34021670-chr11:34071468..34075941,12	MCF-7	breast:
9	chr11:34016768..34019238-chr11:34070653..34073628,2	K562	blood:
10	chr11:34017787..34020470-chr11:34083587..34085765,2	K562	blood:
11	chr11:33998966..34000482-chr11:34017921..34020175,2	MCF-7	breast:
12	chr11:34017295..34020752-chr11:34087860..34091315,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032478	0.82[AMR][1000 genomes]
rs11032479	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11603098	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280158	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12281999	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12282130	0.82[AMR][1000 genomes]
rs7102479	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10363	chr11:34015216-34018311	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34013400-34018400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:34013400-34018800	Weak transcription	Dnd41	blood
3	chr11:34013600-34018400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:34016400-34018800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:34016400-34020400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:34016800-34018400	Weak transcription	K562	blood
7	chr11:34017800-34018400	Enhancers	Fetal Intestine Small	intestine
8	chr11:34017800-34019600	Enhancers	Fetal Intestine Large	intestine
9	chr11:34018200-34018400	Enhancers	Brain Angular Gyrus	brain
10	chr11:34018200-34018400	Enhancers	Brain Substantia Nigra	brain
11	chr11:34018200-34018400	Enhancers	Colonic Mucosa	Colon
12	chr11:34018200-34018400	Active TSS	Hela-S3	cervix
13	chr11:34018200-34018600	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr11:34018200-34018600	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr11:34018200-34019200	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:34018200-34019400	Bivalent Enhancer	Fetal Stomach	stomach
17	chr11:34018200-34019600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:34018200-34019600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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