Variant report

Variant	rs7102479
Chromosome Location	chr11:34019226-34019227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34018694..34020673-chr11:34026178..34028156,2	K562	blood:
2	chr11:34016657..34020888-chr11:34127780..34130463,3	K562	blood:
3	chr11:34017204..34020055-chr11:34021200..34023906,3	K562	blood:
4	chr11:34017302..34020894-chr11:34072155..34075321,5	MCF-7	breast:
5	chr11:34017030..34019308-chr11:34075054..34077905,2	K562	blood:
6	chr11:34018236..34019254-chr11:34072775..34073515,3	MCF-7	breast:
7	chr11:34018085..34021579-chr11:34051099..34053696,3	K562	blood:
8	chr11:34018287..34020760-chr11:34051667..34053419,2	K562	blood:
9	chr11:34018779..34021162-chr11:34095181..34097010,2	K562	blood:
10	chr11:34017694..34021670-chr11:34071468..34075941,12	MCF-7	breast:
11	chr11:34016768..34019238-chr11:34070653..34073628,2	K562	blood:
12	chr11:34018480..34020975-chr11:34073812..34076765,2	K562	blood:
13	chr11:34017787..34020470-chr11:34083587..34085765,2	K562	blood:
14	chr11:33998966..34000482-chr11:34017921..34020175,2	MCF-7	breast:
15	chr11:34017295..34020752-chr11:34087860..34091315,4	K562	blood:
16	chr11:34006320..34008522-chr11:34018561..34020170,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction

rs_ID	r²[population]
rs11032478	0.82[AMR][1000 genomes]
rs11032479	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11603098	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280158	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12281999	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12282130	0.82[AMR][1000 genomes]
rs12283374	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34016400-34020400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:34017800-34019600	Enhancers	Fetal Intestine Large	intestine
3	chr11:34018200-34019400	Bivalent Enhancer	Fetal Stomach	stomach
4	chr11:34018200-34019600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:34018200-34019600	Enhancers	Brain Germinal Matrix	brain
6	chr11:34018400-34019400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr11:34018400-34019400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr11:34018400-34019400	Enhancers	Liver	Liver
9	chr11:34018400-34019400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr11:34018400-34019600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:34018400-34019600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:34018400-34019800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
13	chr11:34018400-34019800	Flanking Active TSS	Hela-S3	cervix
14	chr11:34018600-34019600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:34018800-34019400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
16	chr11:34018800-34019400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:34018800-34019400	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr11:34018800-34019400	Enhancers	Fetal Brain Female	brain
19	chr11:34018800-34019400	Enhancers	Fetal Kidney	kidney
20	chr11:34018800-34019400	Flanking Active TSS	GM12878-XiMat	blood
21	chr11:34018800-34019400	Flanking Active TSS	HMEC	breast
22	chr11:34018800-34019400	Flanking Active TSS	K562	blood
23	chr11:34018800-34019400	Flanking Active TSS	Osteobl	bone
24	chr11:34018800-34019600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:34018800-34019600	Enhancers	Fetal Intestine Small	intestine
26	chr11:34018800-34019600	Flanking Active TSS	NHEK	skin
27	chr11:34019000-34019400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:34019000-34019400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
29	chr11:34019000-34019400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
30	chr11:34019000-34019400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:34019000-34019400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:34019000-34019400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr11:34019000-34019400	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr11:34019000-34019400	Bivalent Enhancer	Dnd41	blood
35	chr11:34019000-34019400	Enhancers	NH-A	brain
36	chr11:34019000-34019600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
37	chr11:34019000-34019600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
38	chr11:34019000-34019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:34019000-34019600	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr11:34019000-34019600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:34019000-34019600	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr11:34019000-34019600	Enhancers	Fetal Brain Male	brain
43	chr11:34019000-34019600	Flanking Active TSS	A549	lung
44	chr11:34019000-34019600	Flanking Bivalent TSS/Enh	HepG2	liver
45	chr11:34019000-34019800	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:34019000-34019800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:34019000-34019800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr11:34019000-34021200	Enhancers	Brain Substantia Nigra	brain
49	chr11:34019200-34019400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:34019200-34019400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell

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