Variant report

Variant	rs12285631
Chromosome Location	chr11:36315080-36315081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10836525	0.96[EUR][1000 genomes]
rs11033520	0.96[EUR][1000 genomes]
rs12272725	0.96[EUR][1000 genomes]
rs12274512	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278582	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282145	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283981	0.86[EUR][1000 genomes]
rs12285953	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12286007	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286010	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12286643	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292727	0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293902	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294357	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289984	0.96[EUR][1000 genomes]
rs2289985	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36317400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:36311400-36322600	Weak transcription	Spleen	Spleen
3	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:36311600-36317000	Weak transcription	Hela-S3	cervix
5	chr11:36311600-36317400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:36311600-36317600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:36311600-36318400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:36311600-36318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:36311800-36317200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:36311800-36321800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:36312000-36316600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:36312200-36317800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:36312800-36315800	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:36314200-36321200	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:36314400-36316000	Weak transcription	Brain Substantia Nigra	brain
17	chr11:36314400-36316400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:36314400-36316600	Weak transcription	Brain Angular Gyrus	brain
19	chr11:36314400-36316600	Weak transcription	Brain Anterior Caudate	brain
20	chr11:36314400-36318000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:36314400-36318400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:36314400-36318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:36314400-36318600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:36314600-36316400	Weak transcription	Adipose Nuclei	Adipose

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