Variant report

Variant	rs11033520
Chromosome Location	chr11:36297182-36297183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10836524	0.86[ASN][1000 genomes]
rs10836525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033523	0.86[ASN][1000 genomes]
rs11033526	0.86[ASN][1000 genomes]
rs11033535	0.86[ASN][1000 genomes]
rs11529292	0.86[ASN][1000 genomes]
rs11820100	0.86[ASN][1000 genomes]
rs12272725	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274512	0.94[EUR][1000 genomes]
rs12275072	1.00[EUR][1000 genomes]
rs12278582	1.00[EUR][1000 genomes]
rs12282145	0.96[EUR][1000 genomes]
rs12283981	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12284807	0.86[ASN][1000 genomes]
rs12285631	0.96[EUR][1000 genomes]
rs12285953	0.94[EUR][1000 genomes]
rs12286007	0.82[EUR][1000 genomes]
rs12286010	0.92[EUR][1000 genomes]
rs12286643	1.00[EUR][1000 genomes]
rs12292727	0.98[EUR][1000 genomes]
rs12293902	1.00[EUR][1000 genomes]
rs12294357	0.98[EUR][1000 genomes]
rs2289979	0.84[ASN][1000 genomes]
rs2289984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289985	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305168	0.86[ASN][1000 genomes]
rs3812765	0.86[ASN][1000 genomes]
rs8181552	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36280400-36299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36280800-36300200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:36282200-36302000	Weak transcription	NHEK	skin
4	chr11:36283000-36298000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:36283200-36300000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:36287600-36304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:36288000-36310200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:36288400-36304600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:36289200-36299800	Weak transcription	HepG2	liver
10	chr11:36289200-36300000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:36290800-36310400	Weak transcription	Stomach Mucosa	stomach
12	chr11:36291000-36298200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:36291000-36298400	Strong transcription	Fetal Stomach	stomach
14	chr11:36291000-36301200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:36291000-36301800	Weak transcription	Right Atrium	heart
16	chr11:36291200-36298000	Strong transcription	Spleen	Spleen
17	chr11:36291200-36299000	Strong transcription	Adipose Nuclei	Adipose
18	chr11:36291200-36299000	Strong transcription	Ovary	ovary
19	chr11:36291200-36299200	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:36291200-36299400	Strong transcription	Brain Angular Gyrus	brain
21	chr11:36291200-36299400	Strong transcription	Brain Hippocampus Middle	brain
22	chr11:36291200-36302200	Strong transcription	Stomach Smooth Muscle	stomach
23	chr11:36291200-36302400	Strong transcription	Primary T cells from cord blood	blood
24	chr11:36291200-36302800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:36291400-36298400	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr11:36291400-36298800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:36291400-36303000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:36291800-36301200	Strong transcription	Fetal Intestine Large	intestine
29	chr11:36291800-36302200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:36292000-36298000	Weak transcription	NH-A	brain
31	chr11:36292000-36298200	Strong transcription	Brain Anterior Caudate	brain
32	chr11:36292000-36298200	Strong transcription	Brain Germinal Matrix	brain
33	chr11:36292000-36298200	Strong transcription	Thymus	Thymus
34	chr11:36292000-36298800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:36292000-36299000	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr11:36292000-36302000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:36292000-36302400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr11:36292000-36303200	Strong transcription	Primary B cells from cord blood	blood
39	chr11:36292000-36309600	Weak transcription	Psoas Muscle	Psoas
40	chr11:36292200-36298800	Strong transcription	Gastric	stomach
41	chr11:36292200-36299200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:36292200-36301200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:36292200-36302200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:36292200-36302200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:36292200-36302400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:36292200-36309600	Weak transcription	A549	lung
47	chr11:36292400-36298000	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:36292400-36302000	Strong transcription	Liver	Liver
49	chr11:36292400-36302200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:36292400-36302400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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