Variant report

Variant	rs11033535
Chromosome Location	chr11:36309463-36309464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36308553..36310519-chr3:28494833..28496353,2	K562	blood:
2	chr11:36303032..36306180-chr11:36307506..36310865,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10836524	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10836525	0.86[ASN][1000 genomes]
rs11033516	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11033520	0.86[ASN][1000 genomes]
rs11033523	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11033526	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11529292	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11820100	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12272725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12283946	0.82[ASN][1000 genomes]
rs12284807	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2289979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2289984	0.86[ASN][1000 genomes]
rs2289985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2305168	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3812765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8181552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3359911	chr11:36307601-36310149	Weak transcription Active TSS Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3375312	chr11:36307926-36309974	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36288000-36310200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:36290800-36310400	Weak transcription	Stomach Mucosa	stomach
3	chr11:36292000-36309600	Weak transcription	Psoas Muscle	Psoas
4	chr11:36292200-36309600	Weak transcription	A549	lung
5	chr11:36295000-36310000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:36296400-36309800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:36296600-36309600	Weak transcription	Fetal Lung	lung
8	chr11:36296600-36309600	Weak transcription	NHLF	lung
9	chr11:36298200-36310000	Weak transcription	NHDF-Ad	bronchial
10	chr11:36300600-36309600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:36300600-36309600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:36300600-36309600	Weak transcription	Right Ventricle	heart
13	chr11:36300800-36309600	Weak transcription	Pancreas	Pancrea
14	chr11:36300800-36309600	Weak transcription	Spleen	Spleen
15	chr11:36300800-36310000	Weak transcription	Colonic Mucosa	Colon
16	chr11:36300800-36310000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:36300800-36310000	Weak transcription	Gastric	stomach
18	chr11:36301000-36309600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:36301000-36309800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:36301000-36309800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:36301200-36309600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:36301200-36309800	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:36301200-36310200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:36301400-36309600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:36301600-36310000	Weak transcription	Placenta	Placenta
26	chr11:36301800-36309600	Weak transcription	Left Ventricle	heart
27	chr11:36301800-36310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:36302000-36310000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:36302000-36310000	Weak transcription	Thymus	Thymus
30	chr11:36302200-36309600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:36302200-36309600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:36302200-36310000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:36302400-36309600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr11:36302400-36309600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:36302400-36309600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:36302400-36310000	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:36302400-36310200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:36303000-36309600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:36303000-36309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:36303000-36310400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:36303200-36309600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:36303200-36309800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:36303200-36310000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:36303200-36310200	Weak transcription	Esophagus	oesophagus
45	chr11:36303400-36310000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:36304600-36309600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:36304600-36309600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:36304600-36309800	Weak transcription	GM12878-XiMat	blood
49	chr11:36304800-36309800	Weak transcription	HSMM	muscle
50	chr11:36304800-36310000	Weak transcription	Lung	lung

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