Variant report

Variant	rs2289979
Chromosome Location	chr11:36312304-36312305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36311774..36314121-chr11:36530055..36531908,2	K562	blood:
2	chr11:36309810..36312786-chr11:36530434..36531939,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175104	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10836524	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10836525	0.84[ASN][1000 genomes]
rs11033516	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11033520	0.84[ASN][1000 genomes]
rs11033523	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11033526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11033535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11529292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11820100	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12272725	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12283946	0.80[ASN][1000 genomes]
rs12284807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2289984	0.84[ASN][1000 genomes]
rs2289985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2305168	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3812765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8181552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36312400	Weak transcription	Stomach Mucosa	stomach
2	chr11:36311400-36313800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:36311400-36314000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:36311400-36314000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:36311400-36314000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:36311400-36317400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:36311400-36322600	Weak transcription	Spleen	Spleen
8	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:36311600-36312400	Enhancers	Brain Anterior Caudate	brain
10	chr11:36311600-36312800	Enhancers	Brain Hippocampus Middle	brain
11	chr11:36311600-36312800	Enhancers	Brain Substantia Nigra	brain
12	chr11:36311600-36313800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:36311600-36313800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:36311600-36313800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:36311600-36314000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:36311600-36314000	Weak transcription	Adipose Nuclei	Adipose
17	chr11:36311600-36314200	Weak transcription	Fetal Intestine Small	intestine
18	chr11:36311600-36317000	Weak transcription	Hela-S3	cervix
19	chr11:36311600-36317400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:36311600-36317600	Weak transcription	Fetal Intestine Large	intestine
21	chr11:36311600-36318400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:36311600-36318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:36311800-36313800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:36311800-36317200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:36311800-36321800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:36312000-36316600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:36312200-36313200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:36312200-36317800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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