Variant report

Variant	rs12285977
Chromosome Location	chr11:75439624-75439625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12274915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275093	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281506	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3740844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740845	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502489	1.00[ASN][1000 genomes]
rs73502494	1.00[ASN][1000 genomes]
rs73502496	1.00[ASN][1000 genomes]
rs73502500	0.95[ASN][1000 genomes]
rs73504529	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75431000-75439800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:75433200-75443200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:75434400-75441200	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr11:75435200-75443200	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr11:75435600-75442400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr11:75435600-75443000	Strong transcription	Fetal Intestine Large	intestine
7	chr11:75436600-75440400	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:75436800-75443000	Strong transcription	Fetal Intestine Small	intestine
9	chr11:75437400-75444000	Weak transcription	Right Ventricle	heart
10	chr11:75437400-75444400	Weak transcription	Right Atrium	heart
11	chr11:75437600-75444400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:75438000-75442800	Strong transcription	Liver	Liver
13	chr11:75439400-75442200	Weak transcription	Colonic Mucosa	Colon
14	chr11:75439600-75439800	Enhancers	Left Ventricle	heart
15	chr11:75439600-75440000	Weak transcription	HepG2	liver
16	chr11:75439600-75440200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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