Variant report

Variant	rs2305951
Chromosome Location	chr11:75562648-75562649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75562235..75563926-chr11:75568149..75570504,2	MCF-7	breast:
2	chr11:75547332..75548952-chr11:75561317..75563395,2	MCF-7	breast:
3	chr11:75551367..75555670-chr11:75561757..75566708,7	MCF-7	breast:
4	chr11:75562361..75564351-chr11:75566715..75569531,2	K562	blood:
5	chr11:75525612..75528024-chr11:75562154..75564644,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199362	Chromatin interaction
ENSG00000255507	Chromatin interaction
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12275093	1.00[JPT][hapmap]
rs12281506	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12285977	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3740845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73504529	0.91[ASN][1000 genomes]
rs73504542	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75528600-75563600	Weak transcription	Dnd41	blood
2	chr11:75535400-75579000	Weak transcription	Fetal Intestine Large	intestine
3	chr11:75535800-75573800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:75538000-75563000	Weak transcription	HepG2	liver
5	chr11:75538600-75567600	Weak transcription	Placenta	Placenta
6	chr11:75538800-75591400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:75544000-75584000	Weak transcription	Small Intestine	intestine
8	chr11:75547400-75566400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:75547600-75600000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:75547800-75563400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:75549800-75602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:75550200-75564000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:75550200-75564000	Weak transcription	Fetal Intestine Small	intestine
14	chr11:75550200-75564000	Weak transcription	Fetal Stomach	stomach
15	chr11:75551600-75563400	Weak transcription	NHEK	skin
16	chr11:75551800-75564600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:75551800-75569000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:75552000-75580000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:75553200-75564400	Weak transcription	Gastric	stomach
20	chr11:75553800-75600800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:75557400-75586800	Weak transcription	Ovary	ovary
22	chr11:75558400-75602800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:75559800-75566200	Weak transcription	Hela-S3	cervix
24	chr11:75559800-75575600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:75560200-75579400	Weak transcription	Pancreas	Pancrea
26	chr11:75560800-75562800	Enhancers	Adipose Nuclei	Adipose
27	chr11:75560800-75563000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:75561000-75562800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:75561000-75562800	Enhancers	Fetal Heart	heart
30	chr11:75561000-75563200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:75561200-75562800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr11:75561200-75562800	Enhancers	NHDF-Ad	bronchial
33	chr11:75561200-75563000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:75561200-75563400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:75561200-75563600	Enhancers	HUVEC	blood vessel
36	chr11:75561200-75584200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:75561200-75584800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:75561200-75584800	Weak transcription	Lung	lung
39	chr11:75561400-75562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:75561400-75562800	Enhancers	Brain Angular Gyrus	brain
41	chr11:75561400-75562800	Enhancers	Brain Cingulate Gyrus	brain
42	chr11:75561400-75562800	Enhancers	Brain Hippocampus Middle	brain
43	chr11:75561400-75562800	Enhancers	Colon Smooth Muscle	Colon
44	chr11:75561400-75562800	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr11:75561400-75562800	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr11:75561400-75562800	Enhancers	Rectal Smooth Muscle	rectum
47	chr11:75561400-75562800	Enhancers	Osteobl	bone
48	chr11:75561400-75563000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:75561400-75563400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:75561400-75569400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links