Variant report

Variant	rs12287575
Chromosome Location	chr11:87184520-87184521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10751164	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792957	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898713	0.91[ASN][1000 genomes]
rs10898714	0.91[ASN][1000 genomes]
rs10898715	0.91[ASN][1000 genomes]
rs11235173	0.91[ASN][1000 genomes]
rs11600506	0.91[ASN][1000 genomes]
rs12362481	0.88[ASN][1000 genomes]
rs2375030	0.83[ASN][1000 genomes]
rs4445664	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109605	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114224	0.89[ASN][1000 genomes]
rs7117800	0.89[ASN][1000 genomes]
rs7118093	0.89[ASN][1000 genomes]
rs7129725	0.88[ASN][1000 genomes]
rs7129822	0.89[ASN][1000 genomes]
rs7131221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482600	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925637	0.91[ASN][1000 genomes]
rs7927877	0.92[ASN][1000 genomes]
rs7935389	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943155	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943190	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645704	0.90[ASN][1000 genomes]
rs9645705	0.90[ASN][1000 genomes]
rs9645706	0.91[ASN][1000 genomes]
rs9651757	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87181800-87184600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:87182200-87189000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:87183000-87184600	Enhancers	NHDF-Ad	bronchial
4	chr11:87183000-87185200	Enhancers	HSMM	muscle
5	chr11:87183000-87185400	Enhancers	NHLF	lung
6	chr11:87183200-87185400	Enhancers	Osteobl	bone
7	chr11:87183400-87185000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:87183600-87185000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:87183600-87185000	Enhancers	NH-A	brain
10	chr11:87183600-87185200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:87183600-87185400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:87183800-87184600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:87183800-87184800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:87184000-87184600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:87184000-87185200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:87184200-87185000	Enhancers	HMEC	breast
17	chr11:87184200-87185000	Enhancers	NHEK	skin

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