Variant report

Variant	rs7925637
Chromosome Location	chr11:87204458-87204459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10751164	0.91[ASN][1000 genomes]
rs10792957	0.91[ASN][1000 genomes]
rs10898702	0.83[ASN][1000 genomes]
rs10898703	0.83[ASN][1000 genomes]
rs10898707	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10898713	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898714	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898715	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235160	0.83[ASN][1000 genomes]
rs11235163	0.81[ASN][1000 genomes]
rs11235172	0.84[ASN][1000 genomes]
rs11235173	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235174	0.87[ASN][1000 genomes]
rs11600506	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287575	0.91[ASN][1000 genomes]
rs12362481	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2375031	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs35704664	0.84[EUR][1000 genomes]
rs4445664	0.91[ASN][1000 genomes]
rs6592369	0.84[ASN][1000 genomes]
rs7109605	0.91[ASN][1000 genomes]
rs7113624	0.80[ASN][1000 genomes]
rs7114049	0.82[ASN][1000 genomes]
rs7114224	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117800	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7118093	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129725	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129822	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131221	0.91[ASN][1000 genomes]
rs73524899	0.86[ASN][1000 genomes]
rs7482600	0.91[ASN][1000 genomes]
rs7927877	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7935389	0.90[ASN][1000 genomes]
rs7943155	0.91[ASN][1000 genomes]
rs7943190	0.91[ASN][1000 genomes]
rs9645704	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9645705	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9645706	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651757	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041197	chr11:87185278-87227163	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87203400-87205400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:87203800-87205000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr11:87204000-87205400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:87204200-87204800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:87204200-87205200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:87204200-87205400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:87204400-87204600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr11:87204400-87204800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr11:87204400-87204800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:87204400-87204800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr11:87204400-87204800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr11:87204400-87205400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:87204400-87205600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:87204400-87205800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links