Variant report
| Variant | rs12288059 |
|---|---|
| Chromosome Location | chr11:23948238-23948239 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10734348 | 0.83[ASN][1000 genomes] |
| rs10742016 | 0.83[ASN][1000 genomes] |
| rs10742017 | 0.83[ASN][1000 genomes] |
| rs10767140 | 0.83[ASN][1000 genomes] |
| rs10767142 | 0.83[ASN][1000 genomes] |
| rs10767144 | 0.83[ASN][1000 genomes] |
| rs10834250 | 0.83[ASN][1000 genomes] |
| rs11027626 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12290166 | 1.00[ASN][1000 genomes] |
| rs1879229 | 0.83[ASN][1000 genomes] |
| rs1919220 | 1.00[ASN][1000 genomes] |
| rs2037833 | 1.00[ASN][1000 genomes] |
| rs2139513 | 0.83[ASN][1000 genomes] |
| rs2896682 | 0.83[ASN][1000 genomes] |
| rs2946785 | 0.83[ASN][1000 genomes] |
| rs2946786 | 0.83[ASN][1000 genomes] |
| rs3992999 | 0.83[ASN][1000 genomes] |
| rs4287336 | 0.83[ASN][1000 genomes] |
| rs4350361 | 0.83[ASN][1000 genomes] |
| rs4385898 | 0.83[ASN][1000 genomes] |
| rs4396287 | 0.83[ASN][1000 genomes] |
| rs4547089 | 0.83[ASN][1000 genomes] |
| rs4922669 | 0.83[ASN][1000 genomes] |
| rs7103456 | 0.83[ASN][1000 genomes] |
| rs7113001 | 0.83[ASN][1000 genomes] |
| rs7114651 | 0.83[ASN][1000 genomes] |
| rs7119292 | 0.83[ASN][1000 genomes] |
| rs7119383 | 0.83[ASN][1000 genomes] |
| rs7126341 | 0.83[ASN][1000 genomes] |
| rs7130583 | 0.83[ASN][1000 genomes] |
| rs73429847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9804430 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv897062 | chr11:23687928-24031627 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv916840 | chr11:23710275-24064119 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23945600-23953800 | Weak transcription | Stomach Mucosa | stomach |
