Variant report

Variant	rs1919220
Chromosome Location	chr11:23953713-23953714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10734348	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10742016	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10742017	0.83[ASN][1000 genomes]
rs10767140	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10767142	0.83[ASN][1000 genomes]
rs10767144	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10834250	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11027626	1.00[ASN][1000 genomes]
rs12288059	1.00[ASN][1000 genomes]
rs12290166	1.00[ASN][1000 genomes]
rs1879229	0.83[ASN][1000 genomes]
rs2037833	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2139513	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2896682	0.83[ASN][1000 genomes]
rs2946785	0.83[ASN][1000 genomes]
rs2946786	0.83[ASN][1000 genomes]
rs2957789	0.85[AFR][1000 genomes]
rs3992999	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4287336	0.83[ASN][1000 genomes]
rs4329693	0.94[AFR][1000 genomes]
rs4350361	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4385898	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4396287	0.83[ASN][1000 genomes]
rs4547089	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4922669	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7103456	0.83[ASN][1000 genomes]
rs7113001	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7114651	0.83[ASN][1000 genomes]
rs7116456	1.00[AMR][1000 genomes]
rs7119292	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7119383	0.83[ASN][1000 genomes]
rs7126341	0.83[ASN][1000 genomes]
rs7130583	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9804430	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23945600-23953800	Weak transcription	Stomach Mucosa	stomach
2	chr11:23953200-23954600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:23953200-23955400	Enhancers	HUVEC	blood vessel
4	chr11:23953400-23954000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:23953400-23955200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:23953400-23955200	Enhancers	Hela-S3	cervix
7	chr11:23953600-23954600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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