Variant report

Variant	rs4329693
Chromosome Location	chr11:23962310-23962311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10742016	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10742017	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10767142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10834244	0.90[EUR][1000 genomes]
rs10834250	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12099259	0.89[EUR][1000 genomes]
rs1879229	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1919220	0.94[AFR][1000 genomes]
rs2037833	0.90[AFR][1000 genomes]
rs2139513	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2896675	0.80[AFR][1000 genomes]
rs2946781	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2946785	0.82[EUR][1000 genomes]
rs2946786	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2957789	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3992999	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4287336	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4385898	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4396287	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4547089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4922669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103456	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7111421	0.82[EUR][1000 genomes]
rs7113001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114651	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7119292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7119383	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7126341	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7130583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9804430	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23956400-23963800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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