Variant report

Variant	rs7111421
Chromosome Location	chr11:23993000-23993001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10742017	0.85[EUR][1000 genomes]
rs10767142	0.82[EUR][1000 genomes]
rs10834250	0.81[EUR][1000 genomes]
rs12099259	0.85[EUR][1000 genomes]
rs1879229	0.85[EUR][1000 genomes]
rs2139513	0.89[EUR][1000 genomes]
rs2946781	0.89[EUR][1000 genomes]
rs2946785	1.00[EUR][1000 genomes]
rs2946786	0.89[EUR][1000 genomes]
rs2957789	0.89[EUR][1000 genomes]
rs3992999	0.85[EUR][1000 genomes]
rs4287336	0.85[EUR][1000 genomes]
rs4329693	0.82[EUR][1000 genomes]
rs4385898	0.85[EUR][1000 genomes]
rs4396287	0.85[EUR][1000 genomes]
rs4547089	0.81[EUR][1000 genomes]
rs4922669	0.82[EUR][1000 genomes]
rs7103456	0.85[EUR][1000 genomes]
rs7113001	0.82[EUR][1000 genomes]
rs7114651	0.85[EUR][1000 genomes]
rs7119292	0.85[EUR][1000 genomes]
rs7119383	0.85[EUR][1000 genomes]
rs7126341	0.85[EUR][1000 genomes]
rs7130583	0.85[EUR][1000 genomes]
rs9804430	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897070	chr11:23982573-24074207	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv897071	chr11:23982573-24157765	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23990000-23993800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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