Variant report

Variant	rs12288252
Chromosome Location	chr11:70909621-70909622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70908146..70914464-chr11:70915141..70919274,9	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11232512	0.87[AMR][1000 genomes]
rs11232547	0.87[AMR][1000 genomes]
rs12278677	1.00[AMR][1000 genomes]
rs12286663	0.87[AMR][1000 genomes]
rs12289222	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537499	0.87[AMR][1000 genomes]
rs7940466	0.87[AMR][1000 genomes]
rs7942557	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70892000-70913000	Weak transcription	Stomach Mucosa	stomach
2	chr11:70892800-70915400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:70893200-70915400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:70895800-70917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:70899200-70910400	Weak transcription	Fetal Kidney	kidney
6	chr11:70899800-70917200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:70901800-70916200	Weak transcription	Lung	lung
8	chr11:70905200-70913000	Weak transcription	Gastric	stomach
9	chr11:70905400-70910600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:70906000-70910000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:70906000-70913400	Weak transcription	Liver	Liver
12	chr11:70906000-70917200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:70906000-70917200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:70906000-70928600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:70906200-70916000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:70906200-70916800	Weak transcription	Fetal Intestine Large	intestine
17	chr11:70907600-70911000	Strong transcription	Fetal Intestine Small	intestine
18	chr11:70908200-70910000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:70908200-70910800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:70908200-70911600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:70908200-70917600	Strong transcription	HepG2	liver
22	chr11:70908400-70911000	Enhancers	Placenta	Placenta
23	chr11:70908600-70910400	Weak transcription	Esophagus	oesophagus
24	chr11:70909000-70909800	Strong transcription	Fetal Stomach	stomach
25	chr11:70909000-70910200	Weak transcription	HSMM	muscle
26	chr11:70909200-70909800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:70909200-70910400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:70909200-70913600	Weak transcription	A549	lung
29	chr11:70909600-70910000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:70909600-70910000	Strong transcription	Pancreas	Pancrea

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