Variant report

Variant	rs7942557
Chromosome Location	chr11:70910701-70910702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70908146..70914464-chr11:70915141..70919274,9	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11232512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232537	0.95[ASN][1000 genomes]
rs11232539	0.95[ASN][1000 genomes]
rs11232547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12278677	0.87[AMR][1000 genomes]
rs12286663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288252	0.87[AMR][1000 genomes]
rs12289222	0.87[AMR][1000 genomes]
rs12290227	1.00[ASN][1000 genomes]
rs12292706	0.85[ASN][1000 genomes]
rs12294700	0.81[ASN][1000 genomes]
rs4367969	0.85[ASN][1000 genomes]
rs7103396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73537499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940466	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70892000-70913000	Weak transcription	Stomach Mucosa	stomach
2	chr11:70892800-70915400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:70893200-70915400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:70895800-70917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:70899800-70917200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:70901800-70916200	Weak transcription	Lung	lung
7	chr11:70905200-70913000	Weak transcription	Gastric	stomach
8	chr11:70906000-70913400	Weak transcription	Liver	Liver
9	chr11:70906000-70917200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:70906000-70917200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:70906000-70928600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:70906200-70916000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:70906200-70916800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:70907600-70911000	Strong transcription	Fetal Intestine Small	intestine
15	chr11:70908200-70910800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:70908200-70911600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:70908200-70917600	Strong transcription	HepG2	liver
18	chr11:70908400-70911000	Enhancers	Placenta	Placenta
19	chr11:70909200-70913600	Weak transcription	A549	lung
20	chr11:70909800-70912000	Weak transcription	Fetal Stomach	stomach
21	chr11:70909800-70912200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:70910000-70910800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:70910000-70911000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:70910200-70911800	Enhancers	HSMMtube	muscle
25	chr11:70910200-70912000	Enhancers	HSMM	muscle
26	chr11:70910400-70910800	Enhancers	Pancreas	Pancrea
27	chr11:70910400-70911000	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr11:70910400-70911600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr11:70910400-70911800	Enhancers	Fetal Kidney	kidney
30	chr11:70910600-70910800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:70910600-70911000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:70910600-70915400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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