Variant report

Variant	rs12290227
Chromosome Location	chr11:70900043-70900044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11232512	1.00[ASN][1000 genomes]
rs11232537	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11232539	0.95[ASN][1000 genomes]
rs11232547	0.90[ASN][1000 genomes]
rs12286663	1.00[ASN][1000 genomes]
rs12292706	0.85[ASN][1000 genomes]
rs12294700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4367969	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7103396	1.00[ASN][1000 genomes]
rs7110301	1.00[CEU][hapmap]
rs73537499	1.00[ASN][1000 genomes]
rs7940466	1.00[ASN][1000 genomes]
rs7942557	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70891200-70903600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:70891600-70901200	Weak transcription	Gastric	stomach
3	chr11:70891800-70908400	Weak transcription	A549	lung
4	chr11:70892000-70901600	Weak transcription	Liver	Liver
5	chr11:70892000-70913000	Weak transcription	Stomach Mucosa	stomach
6	chr11:70892600-70905800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:70892800-70900800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:70892800-70900800	Weak transcription	Pancreas	Pancrea
9	chr11:70892800-70915400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:70893000-70901400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:70893200-70915400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:70894600-70901000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:70895800-70917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:70896800-70904200	Strong transcription	HepG2	liver
15	chr11:70897800-70901400	Weak transcription	Fetal Intestine Large	intestine
16	chr11:70898800-70903000	Strong transcription	Fetal Intestine Small	intestine
17	chr11:70899200-70900800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:70899200-70901000	Weak transcription	Spleen	Spleen
19	chr11:70899200-70905600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:70899200-70910400	Weak transcription	Fetal Kidney	kidney
21	chr11:70899800-70901200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:70899800-70901400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:70899800-70917200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:70900000-70900200	Enhancers	Rectal Mucosa Donor 29	rectum

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