Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70891254..70894257-chr11:70911354..70914113,3	MCF-7	breast:
2	chr11:70888498..70892014-chr11:70961351..70964884,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11232512	0.85[ASN][1000 genomes]
rs12286663	0.85[ASN][1000 genomes]
rs12290227	0.85[ASN][1000 genomes]
rs12292706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294700	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3017482	1.00[MEX][hapmap]
rs667028	1.00[MEX][hapmap]
rs7103396	0.85[ASN][1000 genomes]
rs73537499	0.85[ASN][1000 genomes]
rs7940466	0.85[ASN][1000 genomes]
rs7942557	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70882600-70892200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:70887200-70892200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:70887200-70892400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:70889600-70896000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:70890200-70892000	Enhancers	Liver	Liver
6	chr11:70890400-70893000	Enhancers	HepG2	liver
7	chr11:70890600-70892000	Enhancers	Stomach Mucosa	stomach
8	chr11:70890800-70891800	Enhancers	A549	lung
9	chr11:70890800-70892200	Enhancers	HMEC	breast
10	chr11:70891000-70892000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:70891000-70892200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:70891000-70892200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:70891000-70892400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:70891000-70892400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:70891200-70891800	Enhancers	Fetal Intestine Large	intestine
16	chr11:70891200-70892000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:70891200-70903600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:70891600-70892200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:70891600-70892400	Weak transcription	Fetal Intestine Small	intestine
20	chr11:70891600-70892800	Enhancers	Pancreas	Pancrea
21	chr11:70891600-70901200	Weak transcription	Gastric	stomach

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