Variant report

Variant	rs3017482
Chromosome Location	chr11:70742841-70742842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:70742796-70742846	HNPCEpiC	eye:	n/a
2	chr11:70742796-70742846	GM12891	blood:	n/a
3	chr11:70742796-70742846	Hepatocyte	liver:	n/a
4	chr11:70742796-70742846	HRCEpiC	kidney:	n/a
5	chr11:70742796-70742846	HRPEpiC	eye:	n/a
6	chr11:70742796-70742846	HCPEpiC	choroid plexus:	n/a
7	chr11:70742796-70742846	HRE	kidney:	n/a
8	chr11:70742796-70742846	NB4	blood:	n/a
9	chr11:70742796-70742846	AG10803	skin:	n/a
10	chr11:70742796-70742846	ProgFib	skin:	n/a
11	chr11:70742796-70742846	AoSMC	blood vessel:	n/a
12	chr11:70742796-70742846	AG09309	skin:	n/a
13	chr11:70742796-70742846	NHDF-neo	bronchial:	n/a
14	chr11:70742796-70742846	SK-N-SH	brain:	n/a
15	chr11:70742796-70742846	T-47D	breast:	n/a
16	chr11:70742796-70742846	LNCaP	prostate:	n/a
17	chr11:70742796-70742846	RPTEC	kidney:	n/a
18	chr11:70742796-70742846	GM12878	blood:	n/a
19	chr11:70742796-70742846	GM06990	blood:	n/a
20	chr11:70742796-70742846	Hela-S3	cervix:	n/a
21	chr11:70742796-70742846	IMR90	lung:	fetal
22	chr11:70742796-70742846	SKMC	muscle:	n/a
23	chr11:70742796-70742846	SK-N-MC	brain:	n/a
24	chr11:70742796-70742846	BE2_C	brain:	n/a
25	chr11:70742796-70742846	Caco-2	colon:	n/a
26	chr11:70742796-70742846	HCF	heart:	n/a
27	chr11:70742796-70742846	HIPEpiC	eye:	n/a
28	chr11:70742796-70742846	HMEC	breast:	n/a
29	chr11:70742796-70742846	GM19239	blood:	n/a
30	chr11:70742796-70742846	GM12892	blood:	n/a
31	chr11:70742796-70742846	HCT-116	colon:	n/a
32	chr11:70742796-70742846	PFSK-1	brain:	n/a
33	chr11:70742796-70742846	A549	lung:	n/a
34	chr11:70742796-70742846	BJ	skin:	n/a
35	chr11:70742796-70742846	HepG2	liver:	n/a
36	chr11:70742796-70742846	SK-N-SH_RA	brain:	n/a
37	chr11:70742796-70742846	HAEpiC	amniotic membrane:	n/a
38	chr11:70742796-70742846	K562	blood:	n/a
39	chr11:70742796-70742846	ovcar-3	ovarian:	n/a
40	chr11:70742796-70742846	NT2-D1	testis:	n/a
41	chr11:70742796-70742846	HEEpiC	esophagus:	n/a
42	chr11:70742796-70742846	U87	brain:	n/a
43	chr11:70742796-70742846	Jurkat	blood:	n/a
44	chr11:70742796-70742846	NHBE	bronchial:	n/a
45	chr11:70742796-70742846	AG09319	gingival:	n/a
46	chr11:70742796-70742846	CMK	blood:	n/a
47	chr11:70742796-70742846	PrEC	prostate:	n/a
48	chr11:70742796-70742846	MCF10A-Er-Src	breast:	n/a
49	chr11:70742796-70742846	MCF-7	breast:	n/a
50	chr11:70742796-70742846	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
SHANK2	CpG island

rs_ID	r²[population]
rs3019844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4367969	1.00[MEX][hapmap]
rs667028	1.00[MEX][hapmap]
rs7122521	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70720000-70760200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:70730400-70743200	Weak transcription	Placenta	Placenta
3	chr11:70730800-70746000	Weak transcription	Stomach Mucosa	stomach
4	chr11:70734200-70746600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:70735600-70743600	Strong transcription	HepG2	liver
6	chr11:70736000-70760000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:70736200-70743000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:70736200-70743000	Weak transcription	A549	lung
9	chr11:70736200-70743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:70736200-70759800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:70736400-70743800	Weak transcription	Fetal Intestine Large	intestine
12	chr11:70738200-70745800	Weak transcription	Pancreas	Pancrea
13	chr11:70738600-70743400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:70738800-70745600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:70739600-70746600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:70741600-70743200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:70741600-70744400	Weak transcription	Fetal Stomach	stomach
18	chr11:70741600-70745800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:70741600-70746800	Weak transcription	Gastric	stomach
20	chr11:70741800-70743200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:70741800-70767000	Weak transcription	Liver	Liver
22	chr11:70742800-70743400	Strong transcription	Fetal Intestine Small	intestine

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