Variant report

Variant	rs12288379
Chromosome Location	chr11:32769298-32769299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11031887	0.84[AFR][1000 genomes]
rs11031923	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031946	1.00[AMR][1000 genomes]
rs11031948	1.00[AMR][1000 genomes]
rs11031996	1.00[AMR][1000 genomes]
rs11031997	1.00[AMR][1000 genomes]
rs11031998	1.00[AMR][1000 genomes]
rs11032002	1.00[AMR][1000 genomes]
rs11032003	1.00[AMR][1000 genomes]
rs11032012	1.00[AMR][1000 genomes]
rs11032013	1.00[AMR][1000 genomes]
rs11032014	1.00[AMR][1000 genomes]
rs11032016	1.00[AMR][1000 genomes]
rs11032018	1.00[AMR][1000 genomes]
rs11032020	1.00[AMR][1000 genomes]
rs11032027	1.00[AMR][1000 genomes]
rs11500263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11500265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270653	0.84[AFR][1000 genomes]
rs12271181	1.00[AMR][1000 genomes]
rs12271387	1.00[AMR][1000 genomes]
rs12272530	1.00[AMR][1000 genomes]
rs12272806	1.00[AMR][1000 genomes]
rs12275668	1.00[AMR][1000 genomes]
rs12276083	1.00[AMR][1000 genomes]
rs12276553	1.00[AMR][1000 genomes]
rs12277487	1.00[AMR][1000 genomes]
rs12278625	1.00[AMR][1000 genomes]
rs12279736	1.00[AMR][1000 genomes]
rs12280927	1.00[AMR][1000 genomes]
rs12281351	1.00[AMR][1000 genomes]
rs12282737	1.00[AMR][1000 genomes]
rs12283079	1.00[AMR][1000 genomes]
rs12284266	1.00[AMR][1000 genomes]
rs12284643	1.00[AMR][1000 genomes]
rs12286034	1.00[AMR][1000 genomes]
rs12286067	1.00[AMR][1000 genomes]
rs12286919	1.00[AMR][1000 genomes]
rs12287838	1.00[AMR][1000 genomes]
rs12289390	1.00[AMR][1000 genomes]
rs12289661	1.00[AMR][1000 genomes]
rs12290105	1.00[AMR][1000 genomes]
rs12291088	0.84[AFR][1000 genomes]
rs12291223	1.00[AMR][1000 genomes]
rs12291922	1.00[AMR][1000 genomes]
rs12292567	1.00[AMR][1000 genomes]
rs12292854	1.00[AMR][1000 genomes]
rs12293418	1.00[AMR][1000 genomes]
rs13377413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv983179	chr11:32745147-32782088	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32768200-32769600	ZNF genes & repeats	Liver	Liver
2	chr11:32769200-32769400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links