Variant report

Variant	rs12275668
Chromosome Location	chr11:32729380-32729381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11031887	0.95[AFR][1000 genomes]
rs11031923	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031948	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031982	1.00[YRI][hapmap]
rs11031996	1.00[AMR][1000 genomes]
rs11031997	1.00[AMR][1000 genomes]
rs11031998	1.00[AMR][1000 genomes]
rs11032002	1.00[AMR][1000 genomes]
rs11032003	1.00[AMR][1000 genomes]
rs11032012	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11032013	1.00[AMR][1000 genomes]
rs11032014	1.00[AMR][1000 genomes]
rs11032016	1.00[AMR][1000 genomes]
rs11032017	1.00[YRI][hapmap]
rs11032018	1.00[AMR][1000 genomes]
rs11032020	1.00[AMR][1000 genomes]
rs11032027	1.00[AMR][1000 genomes]
rs11500263	1.00[AMR][1000 genomes]
rs11500265	1.00[AMR][1000 genomes]
rs12270264	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12270653	0.95[AFR][1000 genomes]
rs12271181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271387	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272530	1.00[AMR][1000 genomes]
rs12272806	1.00[AMR][1000 genomes]
rs12276083	1.00[AMR][1000 genomes]
rs12276553	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12276711	1.00[YRI][hapmap]
rs12277487	1.00[AMR][1000 genomes]
rs12278625	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279736	1.00[AMR][1000 genomes]
rs12280927	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281351	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12282737	1.00[AMR][1000 genomes]
rs12283079	1.00[AMR][1000 genomes]
rs12283935	1.00[AFR][1000 genomes]
rs12284266	1.00[AMR][1000 genomes]
rs12284643	1.00[AMR][1000 genomes]
rs12285254	1.00[YRI][hapmap]
rs12286034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286919	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287194	1.00[YRI][hapmap]
rs12287838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288162	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12288379	1.00[AMR][1000 genomes]
rs12289390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289661	1.00[AMR][1000 genomes]
rs12290105	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12291088	0.95[AFR][1000 genomes]
rs12291223	1.00[AMR][1000 genomes]
rs12291922	1.00[AMR][1000 genomes]
rs12292313	0.84[AFR][1000 genomes]
rs12292455	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs12292567	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292854	1.00[AMR][1000 genomes]
rs12293175	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12293280	0.84[AFR][1000 genomes]
rs12293418	1.00[AMR][1000 genomes]
rs13377413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs197706	0.82[YRI][hapmap]
rs2419773	1.00[YRI][hapmap]
rs41490947	0.84[AFR][1000 genomes]
rs9943506	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043616	chr11:32702734-32734607	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32727000-32729800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:32727800-32729600	Enhancers	Hela-S3	cervix
3	chr11:32728200-32729400	Enhancers	GM12878-XiMat	blood
4	chr11:32728200-32729400	Enhancers	HMEC	breast
5	chr11:32728200-32729400	Enhancers	NHLF	lung
6	chr11:32728400-32729400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:32728400-32729400	Flanking Active TSS	A549	lung
8	chr11:32728400-32729400	Enhancers	HepG2	liver
9	chr11:32728400-32729600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:32728400-32729600	Enhancers	NHEK	skin
11	chr11:32728800-32729400	Enhancers	HSMM	muscle
12	chr11:32728800-32729400	Enhancers	NHDF-Ad	bronchial
13	chr11:32728800-32729600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:32729000-32729600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:32729200-32729400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:32729200-32729600	Enhancers	NH-A	brain

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