Variant report

Variant	rs41490947
Chromosome Location	chr11:32592555-32592556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10835898	1.00[AMR][1000 genomes]
rs11031825	1.00[AMR][1000 genomes]
rs11031887	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031923	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11031946	0.84[AFR][1000 genomes]
rs11031948	0.84[AFR][1000 genomes]
rs12270264	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270653	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271181	0.84[AFR][1000 genomes]
rs12271387	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12275668	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12276711	1.00[YRI][hapmap]
rs12280927	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12281351	1.00[YRI][hapmap]
rs12283935	0.84[AFR][1000 genomes]
rs12285254	1.00[YRI][hapmap]
rs12286034	0.84[AFR][1000 genomes]
rs12286067	0.84[AFR][1000 genomes]
rs12286919	1.00[YRI][hapmap]
rs12287194	1.00[YRI][hapmap]
rs12287273	1.00[AMR][1000 genomes]
rs12287838	0.84[AFR][1000 genomes]
rs12288162	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288783	1.00[AMR][1000 genomes]
rs12289390	0.84[AFR][1000 genomes]
rs12291088	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292455	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292567	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12293175	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294446	1.00[AMR][1000 genomes]
rs12294449	1.00[AMR][1000 genomes]
rs13377413	0.84[AFR][1000 genomes]
rs5030285	1.00[AMR][1000 genomes]
rs7936995	1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41490947	PRRG4	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32592000-32592600	Enhancers	Fetal Kidney	kidney
2	chr11:32592200-32592600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr11:32592200-32592800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:32592200-32592800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr11:32592200-32592800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr11:32592200-32595000	Enhancers	Dnd41	blood
7	chr11:32592400-32592800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr11:32592400-32592800	Bivalent Enhancer	K562	blood
9	chr11:32592400-32593000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr11:32592400-32593400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:32592400-32593400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:32592400-32593400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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