Variant report

Variant	rs10835898
Chromosome Location	chr11:32420319-32420320
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11031703	1.00[AMR][1000 genomes]
rs11031825	1.00[AMR][1000 genomes]
rs11824202	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825204	1.00[AMR][1000 genomes]
rs12276632	1.00[AMR][1000 genomes]
rs12283279	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287273	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292313	1.00[AMR][1000 genomes]
rs12293175	1.00[AMR][1000 genomes]
rs12293280	1.00[AMR][1000 genomes]
rs12294446	1.00[AMR][1000 genomes]
rs12294449	1.00[AMR][1000 genomes]
rs41490947	1.00[AMR][1000 genomes]
rs5030285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7107141	1.00[AMR][1000 genomes]
rs7936995	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32408600-32421600	Weak transcription	Left Ventricle	heart
2	chr11:32409400-32422000	Weak transcription	Fetal Kidney	kidney
3	chr11:32412600-32421800	Strong transcription	K562	blood
4	chr11:32414800-32424200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:32417600-32422200	Strong transcription	Ovary	ovary
6	chr11:32418200-32423600	Weak transcription	Spleen	Spleen
7	chr11:32418600-32421600	Weak transcription	Fetal Heart	heart
8	chr11:32418800-32421400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:32419200-32421400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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