Variant report

Variant	rs12287273
Chromosome Location	chr11:32462749-32462750
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10835898	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031703	1.00[AMR][1000 genomes]
rs11031825	1.00[AMR][1000 genomes]
rs11031887	1.00[AMR][1000 genomes]
rs11824202	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825204	1.00[AMR][1000 genomes]
rs12270264	1.00[AMR][1000 genomes]
rs12270653	1.00[AMR][1000 genomes]
rs12276632	1.00[AMR][1000 genomes]
rs12283279	1.00[AMR][1000 genomes]
rs12288162	1.00[AMR][1000 genomes]
rs12288783	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291088	1.00[AMR][1000 genomes]
rs12292313	1.00[AMR][1000 genomes]
rs12292455	1.00[AMR][1000 genomes]
rs12293175	1.00[AMR][1000 genomes]
rs12293280	1.00[AMR][1000 genomes]
rs12294446	1.00[AMR][1000 genomes]
rs12294449	1.00[AMR][1000 genomes]
rs41490947	1.00[AMR][1000 genomes]
rs5030285	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7107141	1.00[AMR][1000 genomes]
rs7936995	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1051559	chr11:32447347-32465233	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32461000-32463200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:32462600-32462800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:32462600-32462800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:32462600-32462800	Bivalent Enhancer	Colon Smooth Muscle	Colon
5	chr11:32462600-32463000	Bivalent Enhancer	Fetal Kidney	kidney
6	chr11:32462600-32463200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:32462600-32465400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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