Variant report
| Variant | rs7936995 |
|---|---|
| Chromosome Location | chr11:32471343-32471344 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:32465131..32467084-chr11:32469130..32471983,4 | K562 | blood: | |
| 2 | chr11:32470229..32472520-chr11:32590568..32592522,2 | K562 | blood: | |
| 3 | chr11:32401045..32403207-chr11:32470669..32473289,2 | K562 | blood: | |
| 4 | chr11:32470724..32474567-chr11:32604115..32608445,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000149100 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10835898 | 1.00[AMR][1000 genomes] |
| rs11031703 | 1.00[AMR][1000 genomes] |
| rs11031795 | 0.82[AFR][1000 genomes] |
| rs11031825 | 1.00[AMR][1000 genomes] |
| rs11031887 | 1.00[AMR][1000 genomes] |
| rs11824202 | 1.00[AMR][1000 genomes] |
| rs11825204 | 1.00[AMR][1000 genomes] |
| rs12270264 | 1.00[AMR][1000 genomes] |
| rs12270653 | 1.00[AMR][1000 genomes] |
| rs12276632 | 1.00[AMR][1000 genomes] |
| rs12283279 | 1.00[AMR][1000 genomes] |
| rs12287273 | 1.00[AMR][1000 genomes] |
| rs12288162 | 1.00[AMR][1000 genomes] |
| rs12288783 | 1.00[AMR][1000 genomes] |
| rs12291088 | 1.00[AMR][1000 genomes] |
| rs12292313 | 1.00[AMR][1000 genomes] |
| rs12292455 | 1.00[AMR][1000 genomes] |
| rs12293175 | 1.00[AMR][1000 genomes] |
| rs12293280 | 1.00[AMR][1000 genomes] |
| rs12294446 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12294449 | 1.00[AMR][1000 genomes] |
| rs41490947 | 1.00[AMR][1000 genomes] |
| rs5030285 | 1.00[AMR][1000 genomes] |
| rs7101468 | 0.82[AFR][1000 genomes] |
| rs7107141 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832108 | chr11:32395937-32560583 | Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2753303 | chr11:32447324-32494924 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:32468800-32471400 | Enhancers | K562 | blood |
| 2 | chr11:32469000-32487800 | Weak transcription | Ovary | ovary |
