Variant report

Variant	rs12294446
Chromosome Location	chr11:32519436-32519437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10835898	1.00[AMR][1000 genomes]
rs11031703	1.00[AMR][1000 genomes]
rs11031825	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031887	1.00[AMR][1000 genomes]
rs11824202	1.00[AMR][1000 genomes]
rs11825204	1.00[AMR][1000 genomes]
rs12270264	1.00[AMR][1000 genomes]
rs12270653	1.00[AMR][1000 genomes]
rs12276632	1.00[AMR][1000 genomes]
rs12283279	1.00[AMR][1000 genomes]
rs12287273	1.00[AMR][1000 genomes]
rs12288162	1.00[AMR][1000 genomes]
rs12288783	1.00[AMR][1000 genomes]
rs12291088	1.00[AMR][1000 genomes]
rs12292313	1.00[AMR][1000 genomes]
rs12292455	1.00[AMR][1000 genomes]
rs12293175	1.00[AMR][1000 genomes]
rs12293280	1.00[AMR][1000 genomes]
rs12294449	1.00[AMR][1000 genomes]
rs41490947	1.00[AMR][1000 genomes]
rs5030285	1.00[AMR][1000 genomes]
rs7107141	1.00[AMR][1000 genomes]
rs7936995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32517400-32521600	Weak transcription	Ovary	ovary
2	chr11:32517600-32521800	Weak transcription	Spleen	Spleen
3	chr11:32518000-32521200	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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