Variant report
| Variant | rs12293280 |
|---|---|
| Chromosome Location | chr11:32601363-32601364 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000149100 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10835898 | 1.00[AMR][1000 genomes] |
| rs11031825 | 1.00[AMR][1000 genomes] |
| rs11031887 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11031923 | 0.89[AFR][1000 genomes] |
| rs11031946 | 0.84[AFR][1000 genomes] |
| rs11031948 | 0.84[AFR][1000 genomes] |
| rs12270264 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12270653 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12271181 | 0.84[AFR][1000 genomes] |
| rs12271387 | 0.84[AFR][1000 genomes] |
| rs12275668 | 0.84[AFR][1000 genomes] |
| rs12280927 | 0.84[AFR][1000 genomes] |
| rs12283935 | 0.84[AFR][1000 genomes] |
| rs12286034 | 0.84[AFR][1000 genomes] |
| rs12286067 | 0.84[AFR][1000 genomes] |
| rs12287273 | 1.00[AMR][1000 genomes] |
| rs12287838 | 0.84[AFR][1000 genomes] |
| rs12288162 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12288783 | 1.00[AMR][1000 genomes] |
| rs12289390 | 0.84[AFR][1000 genomes] |
| rs12291088 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12292313 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12292455 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12292567 | 0.84[AFR][1000 genomes] |
| rs12293175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12294446 | 1.00[AMR][1000 genomes] |
| rs12294449 | 1.00[AMR][1000 genomes] |
| rs13377413 | 0.84[AFR][1000 genomes] |
| rs41490947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs5030285 | 1.00[AMR][1000 genomes] |
| rs7936995 | 1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:32597400-32604200 | Weak transcription | K562 | blood |
