Variant report

Variant	rs12283935
Chromosome Location	chr11:32721390-32721391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11031887	0.95[AFR][1000 genomes]
rs11031923	0.95[AFR][1000 genomes]
rs11031946	1.00[AFR][1000 genomes]
rs11031948	1.00[AFR][1000 genomes]
rs12270264	0.84[AFR][1000 genomes]
rs12270653	0.95[AFR][1000 genomes]
rs12271181	1.00[AFR][1000 genomes]
rs12271387	1.00[AFR][1000 genomes]
rs12275668	1.00[AFR][1000 genomes]
rs12280927	1.00[AFR][1000 genomes]
rs12286034	1.00[AFR][1000 genomes]
rs12286067	1.00[AFR][1000 genomes]
rs12286919	0.95[AFR][1000 genomes]
rs12287838	1.00[AFR][1000 genomes]
rs12288162	0.84[AFR][1000 genomes]
rs12289390	1.00[AFR][1000 genomes]
rs12291088	0.95[AFR][1000 genomes]
rs12292313	0.84[AFR][1000 genomes]
rs12292455	0.89[AFR][1000 genomes]
rs12292567	1.00[AFR][1000 genomes]
rs12293175	0.84[AFR][1000 genomes]
rs12293280	0.84[AFR][1000 genomes]
rs13377413	1.00[AFR][1000 genomes]
rs41490947	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043616	chr11:32702734-32734607	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32711000-32725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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