Variant report

Variant	rs12276711
Chromosome Location	chr11:32678577-32678578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11031887	1.00[AFR][1000 genomes]
rs11031923	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11031982	1.00[YRI][hapmap]
rs11031996	1.00[AMR][1000 genomes]
rs11031997	1.00[AMR][1000 genomes]
rs11031998	1.00[AMR][1000 genomes]
rs11032002	1.00[AMR][1000 genomes]
rs11032003	1.00[AMR][1000 genomes]
rs11032012	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11032013	1.00[AMR][1000 genomes]
rs11032014	1.00[AMR][1000 genomes]
rs11032016	1.00[AMR][1000 genomes]
rs11032017	1.00[YRI][hapmap]
rs11032018	1.00[AMR][1000 genomes]
rs11032020	1.00[AMR][1000 genomes]
rs11032027	1.00[AMR][1000 genomes]
rs11500263	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11500265	1.00[AMR][1000 genomes]
rs12270264	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12270653	1.00[AFR][1000 genomes]
rs12271181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271387	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272530	1.00[AMR][1000 genomes]
rs12272806	1.00[AMR][1000 genomes]
rs12275668	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276083	1.00[AMR][1000 genomes]
rs12276553	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12277487	1.00[AMR][1000 genomes]
rs12278625	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279736	1.00[AMR][1000 genomes]
rs12280927	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281351	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12282737	1.00[AMR][1000 genomes]
rs12283079	1.00[AMR][1000 genomes]
rs12283935	0.95[AFR][1000 genomes]
rs12284643	1.00[AMR][1000 genomes]
rs12285254	1.00[YRI][hapmap]
rs12286034	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286067	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286919	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287194	1.00[YRI][hapmap]
rs12287838	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288162	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12288379	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289661	1.00[AMR][1000 genomes]
rs12290105	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12291088	1.00[AFR][1000 genomes]
rs12291223	1.00[AMR][1000 genomes]
rs12291922	1.00[AMR][1000 genomes]
rs12292313	0.89[AFR][1000 genomes]
rs12292455	0.85[YRI][hapmap];0.95[AFR][1000 genomes]
rs12292567	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292854	1.00[AMR][1000 genomes]
rs12293175	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12293280	0.89[AFR][1000 genomes]
rs12293418	1.00[AMR][1000 genomes]
rs13377413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs197706	0.82[YRI][hapmap]
rs2419773	1.00[YRI][hapmap]
rs41490947	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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