Variant report

Variant	rs12289270
Chromosome Location	chr11:56889245-56889246
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11228901	1.00[AMR][1000 genomes]
rs11228906	0.81[AFR][1000 genomes]
rs11501564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277644	1.00[AMR][1000 genomes]
rs12288446	1.00[AMR][1000 genomes]
rs12290460	1.00[AMR][1000 genomes]
rs12290493	1.00[AMR][1000 genomes]
rs2860248	1.00[AMR][1000 genomes]
rs2860249	1.00[AMR][1000 genomes]
rs2860311	1.00[AMR][1000 genomes]
rs2860313	1.00[AMR][1000 genomes]
rs2860510	1.00[AMR][1000 genomes]
rs2957193	1.00[AMR][1000 genomes]
rs2960567	1.00[AMR][1000 genomes]
rs3016754	1.00[AMR][1000 genomes]
rs3017570	1.00[AMR][1000 genomes]
rs3018193	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56886600-56891000	Weak transcription	Right Atrium	heart
2	chr11:56886800-56889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:56886800-56890400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:56887600-56889600	Enhancers	Placenta	Placenta
5	chr11:56888000-56889400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:56888200-56890600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:56888200-56894600	Enhancers	K562	blood
8	chr11:56888400-56890600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:56888400-56891200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:56889000-56889600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:56889000-56890000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:56889000-56893200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:56889000-56893400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:56889200-56889400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:56889200-56889600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:56889200-56889600	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:56889200-56889600	Enhancers	Fetal Muscle Leg	muscle
18	chr11:56889200-56889600	Enhancers	Psoas Muscle	Psoas
19	chr11:56889200-56892400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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