Variant report

Variant	rs11228906
Chromosome Location	chr11:56862311-56862312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11228848	1.00[AMR][1000 genomes]
rs11228849	1.00[AMR][1000 genomes]
rs11228897	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228901	0.87[AFR][1000 genomes]
rs11501558	1.00[AMR][1000 genomes]
rs11501564	0.81[AFR][1000 genomes]
rs12270396	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273672	1.00[AMR][1000 genomes]
rs12274917	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275563	0.81[AFR][1000 genomes]
rs12275655	0.81[AFR][1000 genomes]
rs12283109	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288998	1.00[AMR][1000 genomes]
rs12289270	0.81[AFR][1000 genomes]
rs12291606	1.00[AMR][1000 genomes]
rs12292674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56856000-56864800	Weak transcription	Fetal Lung	lung
2	chr11:56861000-56862400	Enhancers	Fetal Kidney	kidney
3	chr11:56861000-56863600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:56861400-56862600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:56861400-56864000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:56861600-56862400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:56861600-56862800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:56861800-56862400	Enhancers	HMEC	breast
9	chr11:56861800-56862400	Enhancers	HSMM	muscle
10	chr11:56861800-56862600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:56861800-56864800	Weak transcription	Fetal Stomach	stomach
12	chr11:56862000-56862600	Enhancers	NHEK	skin
13	chr11:56862000-56863200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:56862000-56863200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:56862000-56865400	Weak transcription	Fetal Heart	heart
16	chr11:56862200-56862600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links