Variant report

Variant	rs12288998
Chromosome Location	chr11:56704206-56704207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11228815	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11228816	1.00[YRI][hapmap]
rs11228820	0.84[AFR][1000 genomes]
rs11228843	0.80[AFR][1000 genomes]
rs11228844	0.85[AFR][1000 genomes]
rs11228845	0.85[AFR][1000 genomes]
rs11228848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228897	1.00[AMR][1000 genomes]
rs11228906	1.00[AMR][1000 genomes]
rs11501558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270396	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273568	0.89[AFR][1000 genomes]
rs12273672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274917	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275463	1.00[AFR][1000 genomes]
rs12281273	1.00[YRI][hapmap]
rs12283109	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292674	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56701200-56704600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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