Variant report
| Variant | rs12283109 |
|---|---|
| Chromosome Location | chr11:56819204-56819205 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:56816014..56819417-chr11:56821289..56824569,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000273255 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11228848 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11228849 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11228897 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11228906 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11501558 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12270396 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12273672 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12274917 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12275463 | 0.82[AFR][1000 genomes] |
| rs12288998 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12291606 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12292674 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832162 | chr11:56716658-56901528 | Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915640 | chr11:56814841-57139786 | Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
