Variant report

Variant	rs12292674
Chromosome Location	chr11:56824749-56824750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11228848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228906	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273672	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275463	0.82[AFR][1000 genomes]
rs12283109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288998	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291606	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56823600-56824800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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