Variant report

Variant	rs11501558
Chromosome Location	chr11:56764011-56764012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11228844	0.80[AFR][1000 genomes]
rs11228845	0.80[AFR][1000 genomes]
rs11228848	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228849	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11228897	1.00[AMR][1000 genomes]
rs11228906	1.00[AMR][1000 genomes]
rs12270396	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273568	0.85[AFR][1000 genomes]
rs12273672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275463	0.95[AFR][1000 genomes]
rs12283109	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288998	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292674	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv3418631	chr11:56756505-56785670	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3361446	chr11:56756549-56775770	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56763000-56768800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:56763600-56768400	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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