Variant report

Variant	rs1228932
Chromosome Location	chr7:84115236-84115237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84107857..84110395-chr7:84114744..84117396,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1014498	0.97[EUR][1000 genomes]
rs1029538	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1228861	0.81[ASN][1000 genomes]
rs1228877	0.90[ASN][1000 genomes]
rs1228881	0.89[ASN][1000 genomes]
rs1228897	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228899	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228900	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1228901	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1228902	0.90[EUR][1000 genomes]
rs1228903	0.89[EUR][1000 genomes]
rs1228904	0.96[EUR][1000 genomes]
rs1228905	0.94[EUR][1000 genomes]
rs1228906	0.88[EUR][1000 genomes]
rs1228907	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1228908	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1228910	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228911	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1228914	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228917	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228918	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1228920	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228921	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228924	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228925	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228926	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228928	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1228941	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1228955	0.94[ASN][1000 genomes]
rs1228957	0.94[ASN][1000 genomes]
rs1228964	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1228967	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1228968	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228969	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1228971	0.92[EUR][1000 genomes]
rs1228972	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228973	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228974	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1228975	0.90[EUR][1000 genomes]
rs1228977	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1228978	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1235296	0.94[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1520106	0.92[ASN][1000 genomes]
rs1634611	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1734000	0.89[ASN][1000 genomes]
rs2158168	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2527524	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2706910	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2715035	0.98[ASN][1000 genomes]
rs2715041	0.96[ASN][1000 genomes]
rs2715048	0.95[GIH][hapmap]
rs2905620	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6947440	0.87[ASN][1000 genomes]
rs71558728	0.89[ASN][1000 genomes]
rs9690554	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv888634	chr7:84086502-84196258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84107600-84116600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:84109200-84120000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:84114000-84130600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:84114800-84116600	Strong transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links