Variant report

Variant	rs1634611
Chromosome Location	chr7:84041080-84041081
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM3-4	chr7:84038231-84042095	ucscGeneNc_uc003uia_1

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1228861	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1228862	0.86[EUR][1000 genomes]
rs1228865	0.86[EUR][1000 genomes]
rs1228866	0.81[AFR][1000 genomes]
rs1228877	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1228881	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1228900	0.88[ASN][1000 genomes]
rs1228901	0.81[ASN][1000 genomes]
rs1228907	0.82[EUR][1000 genomes]
rs1228908	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1228910	0.81[EUR][1000 genomes]
rs1228911	0.81[EUR][1000 genomes]
rs1228914	0.91[ASN][1000 genomes]
rs1228917	0.91[ASN][1000 genomes]
rs1228920	0.91[ASN][1000 genomes]
rs1228926	0.91[ASN][1000 genomes]
rs1228932	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1228955	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1228957	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1228962	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1228964	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1228967	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1228969	0.82[EUR][1000 genomes]
rs1228972	0.81[EUR][1000 genomes]
rs1228973	0.81[EUR][1000 genomes]
rs1228974	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1235296	0.92[CEU][hapmap];0.92[YRI][hapmap]
rs1520106	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1557788	0.85[ASN][1000 genomes]
rs1557790	0.88[EUR][1000 genomes]
rs1734000	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2158168	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706910	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2715035	0.93[ASN][1000 genomes]
rs2715041	0.90[ASN][1000 genomes]
rs2905620	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530698	0.81[AFR][1000 genomes]
rs561955	0.81[AFR][1000 genomes]
rs622514	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs625480	0.81[AFR][1000 genomes]
rs6947440	0.96[ASN][1000 genomes]
rs71558728	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84038800-84042800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:84039000-84043000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:84040000-84041200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:84040000-84041200	Enhancers	A549	lung
5	chr7:84040200-84041200	Enhancers	NHLF	lung
6	chr7:84040200-84041400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:84041000-84041200	Enhancers	NH-A	brain
8	chr7:84041000-84041200	Enhancers	NHDF-Ad	bronchial
9	chr7:84041000-84041400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:84041000-84041400	Enhancers	NHEK	skin
11	chr7:84041000-84041400	Enhancers	Osteobl	bone
12	chr7:84041000-84042600	Enhancers	Hela-S3	cervix
13	chr7:84041000-84042600	Enhancers	HMEC	breast

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