Variant report
| Variant | rs12289726 |
|---|---|
| Chromosome Location | chr11:15301137-15301138 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:15296771..15299195-chr11:15299336..15301230,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12272352 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17417725 | 1.00[ASN][1000 genomes] |
| rs1945627 | 1.00[ASN][1000 genomes] |
| rs5029587 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58227988 | 1.00[ASN][1000 genomes] |
| rs61880664 | 1.00[ASN][1000 genomes] |
| rs72857779 | 1.00[ASN][1000 genomes] |
| rs72857781 | 1.00[ASN][1000 genomes] |
| rs72857783 | 1.00[ASN][1000 genomes] |
| rs72857790 | 1.00[ASN][1000 genomes] |
| rs72857795 | 1.00[ASN][1000 genomes] |
| rs72860404 | 1.00[ASN][1000 genomes] |
| rs72860410 | 1.00[ASN][1000 genomes] |
| rs72860411 | 1.00[ASN][1000 genomes] |
| rs72860413 | 1.00[ASN][1000 genomes] |
| rs72860420 | 1.00[ASN][1000 genomes] |
| rs72861917 | 1.00[ASN][1000 genomes] |
| rs72866606 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830370 | chr11:15142247-15444094 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv832072 | chr11:15226843-15392190 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:15299600-15301400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
