Variant report
| Variant | rs61880664 |
|---|---|
| Chromosome Location | chr11:15343532-15343533 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12272352 | 1.00[ASN][1000 genomes] |
| rs12289726 | 1.00[ASN][1000 genomes] |
| rs17417725 | 1.00[ASN][1000 genomes] |
| rs1945627 | 1.00[ASN][1000 genomes] |
| rs5029587 | 1.00[ASN][1000 genomes] |
| rs58227988 | 1.00[ASN][1000 genomes] |
| rs72857779 | 1.00[ASN][1000 genomes] |
| rs72857781 | 1.00[ASN][1000 genomes] |
| rs72857783 | 1.00[ASN][1000 genomes] |
| rs72857790 | 1.00[ASN][1000 genomes] |
| rs72857795 | 1.00[ASN][1000 genomes] |
| rs72860404 | 1.00[ASN][1000 genomes] |
| rs72860410 | 1.00[ASN][1000 genomes] |
| rs72860411 | 1.00[ASN][1000 genomes] |
| rs72860413 | 1.00[ASN][1000 genomes] |
| rs72860420 | 1.00[ASN][1000 genomes] |
| rs72861917 | 1.00[ASN][1000 genomes] |
| rs72866606 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72868218 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830370 | chr11:15142247-15444094 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv832072 | chr11:15226843-15392190 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:15341000-15344000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
