Variant report

Variant	rs12290139
Chromosome Location	chr11:59278788-59278789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:59278363-59278823	HUVEC	blood vessel:	n/a	n/a
2	FOS	chr11:59278378-59278809	HUVEC	blood vessel:	n/a	chr11:59278467-59278479

Variant related genes	Relation type
OR4D9	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11229984	0.94[AFR][1000 genomes]
rs12272496	0.86[AFR][1000 genomes]
rs57137541	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59276000-59279400	Enhancers	Primary hematopoietic stem cells	blood
2	chr11:59276200-59279800	Enhancers	Primary T cells from cord blood	blood
3	chr11:59277600-59278800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr11:59277600-59279000	Enhancers	Dnd41	blood
5	chr11:59277800-59279000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:59277800-59279200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:59277800-59279400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:59277800-59279400	Enhancers	Fetal Thymus	thymus
9	chr11:59278000-59278800	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:59278000-59278800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:59278000-59279000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:59278000-59279000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr11:59278000-59279000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:59278000-59279000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr11:59278000-59279200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:59278000-59279600	Enhancers	Adipose Nuclei	Adipose
17	chr11:59278200-59278800	Enhancers	Primary B cells from cord blood	blood
18	chr11:59278200-59279000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:59278400-59278800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:59278400-59278800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:59278400-59278800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:59278400-59278800	Flanking Active TSS	HUVEC	blood vessel
23	chr11:59278600-59278800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr11:59278600-59279000	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:59278600-59279200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr11:59278600-59279400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:59278600-59279800	Enhancers	Primary monocytes fromperipheralblood	blood

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