Variant report

Variant	rs12272496
Chromosome Location	chr11:59297508-59297509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11229984	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230060	1.00[AMR][1000 genomes]
rs12275935	1.00[AMR][1000 genomes]
rs12276470	1.00[AMR][1000 genomes]
rs12283319	1.00[AMR][1000 genomes]
rs12288523	1.00[AMR][1000 genomes]
rs12290139	0.86[AFR][1000 genomes]
rs12291351	1.00[AMR][1000 genomes]
rs12292617	1.00[AMR][1000 genomes]
rs12293459	1.00[AMR][1000 genomes]
rs12295294	1.00[AMR][1000 genomes]
rs28571182	1.00[AMR][1000 genomes]
rs28573682	1.00[AMR][1000 genomes]
rs57137541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58485629	1.00[AMR][1000 genomes]
rs60434270	1.00[AMR][1000 genomes]
rs7129130	1.00[AMR][1000 genomes]
rs73484858	1.00[AMR][1000 genomes]
rs73486922	1.00[AMR][1000 genomes]
rs73488876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59296200-59304800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:59297000-59299400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:59297200-59301800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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